![]() If you’re in the market, check out our picks for the best accounting software for small businesses. If you have been processing payroll in QuickBooks Online but printing paper checks, begin by going into Settings and then selecting Payroll Settings.ĭid you know? Payroll and accounting are tightly intertwined processes. If you’re new to QuickBooks Online, it will prompt you to set up direct deposit when you’re in the process of setting up payroll. Once you have these items, you can set up direct deposit.
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